provide a singularity container for running SIMON
Posted: Thu May 06, 2021 7:46 am
Hi,
First of all, great work with SIMON! I really like the concept and how it can facilitate and automate ML applications for biological problems.
Currently, you only offer a docker image to run SIMON. Unfortunately, only singularity is available in our cluster and I suspect this situation may affect other users as well since many cluster admins prefer singularity over docker.
I've tried using your docker image with singularity through automatic conversion, but despite my efforts, I was unable to start SIMON.
After some adjustments to bind all the needed paths, it seems there are still issues with permissions when the startup script in the container tries to configure the requested folders. Thus, the various tools can not run properly.
Any suggestion on how to run this using singularity or any plan to provide a singularity image?
Thanks!
First of all, great work with SIMON! I really like the concept and how it can facilitate and automate ML applications for biological problems.
Currently, you only offer a docker image to run SIMON. Unfortunately, only singularity is available in our cluster and I suspect this situation may affect other users as well since many cluster admins prefer singularity over docker.
I've tried using your docker image with singularity through automatic conversion, but despite my efforts, I was unable to start SIMON.
After some adjustments to bind all the needed paths, it seems there are still issues with permissions when the startup script in the container tries to configure the requested folders. Thus, the various tools can not run properly.
Any suggestion on how to run this using singularity or any plan to provide a singularity image?
Thanks!